What Does Batch Size Mean in Deep Learning? An In-Depth Guide
March 18, 2025
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Apply Deep Learning in Electronic Health Records. Understand the road path from data mining of clinical databases to clinical decision support systems
Instructor: Fani Deligianni
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Intermediate level
Last year undergraduate or master students of computing science or engineering. Basic knowledge on SQL queries and python is required.
(21 reviews)
Recommended experience
Intermediate level
Last year undergraduate or master students of computing science or engineering. Basic knowledge on SQL queries and python is required.
Extract and preprocess data from complex clinical databases
Apply deep learning in Electronic Health Records
Imputation of Electronic Health Records and data encodings
Explainable, fair and privacy-preserved Clinical Decision Support Systems
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This specialisation is for learners with experience in programming that are interested in expanding their skills in applying deep learning in Electronic Health Records and with a focus on how to translate their models into Clinical Decision Support Systems.
The main areas that would explore are:
Data mining of Clinical Databases: Ethics, MIMIC III database, International Classification of Disease System and definition of common clinical outcomes.
Deep learning in Electronic Health Records: From descriptive analytics to predictive analytics
Explainable deep learning models for healthcare applications: What it is and why it is needed
Clinical Decision Support Systems: Generalisation, bias, ‘fairness’, clinical usefulness and privacy of artificial intelligence algorithms.
Applied Learning Project
Learners have the opportunity to choose and undertake an exercise based on MIMIC-III extracted datasets that combines knowledge from:
Data mining of Clinical Databases to query the MIMIC database
Deep learning in Electronic Health Records to pre-process EHR and build deep learning models
Explainable deep learning models for healthcare to explain the models decision
Learners can choose from:
1. Permutation feature importance on the MIMIC critical care database
The technique is applied both on logistic regression and on an LSTM model. The explanations derived are global explanations of the model.
2. LIME on the MIMIC critical care database
The technique is applied on both logistic regression and an LSTM model. The explanations derived are local explanations of the model.
3. Grad-CAM on the MIMIC critical care database
GradCam is implemented and applied on an LSTM model that predicts mortality. The explanations derived are local explanations of the model.
Understand the Schema of publicly available EHR databases (MIMIC-III)
Recognise the International Classification of Diseases (ICD) use
Extract and visualise descriptive statistics from clinical databases
Understand and extract key clinical outcomes such as mortality and stay of length
Train deep learning architectures such as Multi-layer perceptron, Convolutional Neural Networks and Recurrent Neural Networks for classification
Validate and compare different machine learning algorithms
Preprocess Electronic Health Records and represent them as time-series data
Imputation strategies and data encodings
Program global explainability methods in time-series classification
Program local explainability methods for deep learning such as CAM and GRAD-CAM
Understand axiomatic attributions for deep learning networks
Incorporate attention in Recurrent Neural Networks and visualise the attention weights
Evaluating Clinical Decision Support Systems
Bias, Calibration and Fairness in Machine Learning Models
Decision Curve Analysis and Human-Centred Clinical Decision Support Systems
Privacy concerns in Clinical Decision Support Systems
This course is a capstone assignment requiring you to apply the knowledge and skill you have learnt throughout the specialization. In this course you will choose one of the areas and complete the assignment to pass.
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Each module is designed to take 4-5 weeks. Modules two and three are heavy in practical exercise and it may take slightly longer for inexperienced in machine learning learners.
It is required basic knowledge in sql databases and how to setup a postgres database. It also requires knowledge in python programming with common scientific libraries, such as numpy, scipy and matplotlib.
Yes, the course is designed to be taken with the prespecified order. Specifically, the second module requires knowledge from the first module, the third module requires knowledge from the second module and the forth module requires high-level understanding of module one, two and three.
No
Implement benchmark pipelines for Deep Learning Algorithms with Electronic Health Records.
This course is completely online, so there’s no need to show up to a classroom in person. You can access your lectures, readings and assignments anytime and anywhere via the web or your mobile device.
If you subscribed, you get a 7-day free trial during which you can cancel at no penalty. After that, we don’t give refunds, but you can cancel your subscription at any time. See our full refund policy.
Yes! To get started, click the course card that interests you and enroll. You can enroll and complete the course to earn a shareable certificate, or you can audit it to view the course materials for free. When you subscribe to a course that is part of a Specialization, you’re automatically subscribed to the full Specialization. Visit your learner dashboard to track your progress.
Yes. In select learning programs, you can apply for financial aid or a scholarship if you can’t afford the enrollment fee. If fin aid or scholarship is available for your learning program selection, you’ll find a link to apply on the description page.
When you enroll in the course, you get access to all of the courses in the Specialization, and you earn a certificate when you complete the work. If you only want to read and view the course content, you can audit the course for free. If you cannot afford the fee, you can apply for financial aid.
Financial aid available,