What Does MVP Stand For? It’s Not What You Think.
October 7, 2024
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This course is part of Researcher's Guide to Omic Data Specialization
Instructor: Candace Savonen, MS
Included with
Recommended experience
Intermediate level
Some experience with biology is strongly encouraged
Recommended experience
Intermediate level
Some experience with biology is strongly encouraged
You will understand the goals and general workflows associated with your RNA focused data as well as tools and resources you should consider.
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This course is a follow up course to "Choosing genomics tools" which dives into further detail about RNA informatics methods!
This course is for individuals who: - Have taken Researcher's Guide to Fundamentals of Omic Data - Have RNA data and don’t know what to do with it. - Want a basic overview of their RNA focused data type. - Want to find resources for processing and interpreting RNA data What this course will cover: - Fundamentals of RNA methods. - Resources you may consider looking into for your own purposes. - Questions you should ask yourself and your colleagues about your goals and experimental design. What this course will NOT cover: - Code needed to process your data. - Details about every type of experimental design. - Everything you’d need to know to make you a computational biologist. In other words we still highly encourage you to consult your informatics and computational colleagues, especially those who may have done any handling of data you are trying to learn about.
In this first module we introduce the goals of this course an do an overview of the available methods for RNA methods, otherwise known as gene expression.
3 videos1 reading2 assignments1 discussion prompt
In this module we dive into Bulk RNA-seq methods for evaluating gene expression of tissue.
1 video2 readings2 assignments1 discussion prompt
In this module we dive into single cell RNA-seq methods for evaluating gene expression of single cells.
1 video2 readings2 assignments1 discussion prompt
In this module we dive into gene expression of tissue but with spatial information.
1 video2 readings2 assignments1 discussion prompt
To wrap up this course, we have a quick section about gene expression microarrays before we wrap up the course with a final course knowledge check.
3 readings1 assignment1 discussion prompt
Fred Hutchinson Cancer Center unites individualized care and advanced research to provide the latest cancer treatment options while accelerating discoveries that prevent, treat and cure cancer and infectious diseases worldwide. Based in Seattle, Fred Hutch is an independent, nonprofit organization and the only National Cancer Institute-designated cancer center in Washington. We have earned a global reputation for our track record of discoveries in cancer, infectious disease and basic research, including important advances in bone marrow transplantation, immunotherapy, HIV/AIDS prevention and COVID-19 vaccines. Fred Hutch operates eight clinical care sites that provide medical oncology, infusion, radiation, proton therapy and related services and has network affiliations with hospitals in four states. Fred Hutch also serves as UW Medicine’s cancer program.
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